Arsenic in PDB 7jkk: Self-Assembly of A 3D Dna Crystal Lattice (4X6 Scramble Duplex Version) Containing the J10 Immobile Holliday Junction with R3 Symmetry

The structure of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Scramble Duplex Version) Containing the J10 Immobile Holliday Junction with R3 Symmetry, PDB code: 7jkk was solved by C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.02 / 2.79
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	113.078, 113.078, 52.131, 90, 90, 120
R / Rfree (%)	23 / 25.7

The structure of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Scramble Duplex Version) Containing the J10 Immobile Holliday Junction with R3 Symmetry also contains other interesting chemical elements:

Magnesium

(Mg)

3 atoms

The binding sites of Arsenic atom in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Scramble Duplex Version) Containing the J10 Immobile Holliday Junction with R3 Symmetry (pdb code 7jkk). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total only one binding site of Arsenic was determined in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Scramble Duplex Version) Containing the J10 Immobile Holliday Junction with R3 Symmetry, PDB code: 7jkk:

Arsenic binding site 1 out of 1 in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Scramble Duplex Version) Containing the J10 Immobile Holliday Junction with R3 Symmetry


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Scramble Duplex Version) Containing the J10 Immobile Holliday Junction with R3 Symmetry within 5.0Å range: probe atom residue distance (Å) B Occ C:As101 b:187.5 occ:1.00 N7 C:DG35 4.1 57.9 1.0 O6 C:DG35 4.2 61.9 1.0 N6 A:DA1 4.2 56.8 1.0 C5 C:DC34 4.9 55.5 1.0 C6 C:DG35 4.9 55.4 1.0 C5 C:DG35 4.9 55.5 1.0

C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan. Structural and Computational Based Approach For the Creation of A Toolbox of Immobile Holliday Junctions For Dna-Directed Self-Assembly To Be Published.