Arsenic in PDB 7joi: Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J30 Immobile Holliday Junction

The structure of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J30 Immobile Holliday Junction, PDB code: 7joi was solved by C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.01 / 3.15
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	68.025, 68.025, 53.298, 90, 90, 120
R / Rfree (%)	24.8 / 26.8

The binding sites of Arsenic atom in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J30 Immobile Holliday Junction (pdb code 7joi). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 2 binding sites of Arsenic where determined in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J30 Immobile Holliday Junction, PDB code: 7joi:
Jump to Arsenic binding site number: 1; 2;

Arsenic binding site 1 out of 2 in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J30 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J30 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ B:As101 b:266.6 occ:1.00 H41 B:DC0 3.6 91.5 1.0 N4 B:DC0 4.4 76.5 1.0 H42 B:DC0 4.7 91.5 1.0 H5 A:DC13 4.8 107.7 1.0 H5 B:DC0 4.9 81.8 1.0

Arsenic binding site 2 out of 2 in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J30 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J30 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ D:As101 b:282.6 occ:1.00 OP1 D:DG11 3.8 86.3 1.0 OP2 D:DG11 4.1 104.1 1.0 P D:DG11 4.3 101.2 1.0 O3' D:DG10 4.6 86.2 1.0 O5' D:DG10 4.9 64.7 1.0

C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan. Structural and Computational Based Approach For the Creation of A Toolbox of Immobile Holliday Junctions For Dna-Directed Self-Assembly To Be Published.