Arsenic in PDB 7jok: Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J26 Immobile Holliday Junction

The structure of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J26 Immobile Holliday Junction, PDB code: 7jok was solved by C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.09 / 3.11
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	68.172, 68.172, 55.083, 90, 90, 120
R / Rfree (%)	24.6 / 26.7

The binding sites of Arsenic atom in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J26 Immobile Holliday Junction (pdb code 7jok). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 3 binding sites of Arsenic where determined in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J26 Immobile Holliday Junction, PDB code: 7jok:
Jump to Arsenic binding site number: 1; 2; 3;

Arsenic binding site 1 out of 3 in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J26 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J26 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ B:As101 b:195.5 occ:1.00 H71 B:DT0 3.0 88.3 1.0 H72 B:DT0 3.5 88.3 1.0 C7 B:DT0 3.7 73.5 1.0 H73 B:DT0 4.2 88.3 1.0 N7 C:DG8 4.5 56.0 1.0 O4 B:DT0 4.5 67.1 1.0 H73 C:DT7 4.6 66.8 1.0 C5 B:DT0 4.8 64.9 1.0

Arsenic binding site 2 out of 3 in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J26 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J26 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ C:As101 b:147.4 occ:1.00 O2 C:DT3 3.3 98.6 1.0 H1' C:DT3 4.0 124.3 1.0 H2 A:DA21 4.1 100.1 1.0 C2 C:DT3 4.5 94.2 1.0 O4' C:DG4 4.7 110.2 1.0 H4' C:DG4 4.7 139.8 1.0 C1' C:DT3 4.8 103.4 1.0 O4' C:DT3 4.9 119.3 1.0 H5' C:DG4 4.9 131.3 1.0 C2 A:DA21 5.0 83.3 1.0

Arsenic binding site 3 out of 3 in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J26 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 3 of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J26 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ D:As101 b:129.5 occ:1.00 N7 D:DG11 3.9 63.0 1.0 N7 D:DA10 4.2 61.5 1.0 O6 D:DG11 4.3 81.6 1.0 H62 D:DA10 4.4 68.8 1.0 OP2 D:DA10 4.4 64.6 1.0 C5 D:DA10 4.7 56.5 1.0 C8 D:DA10 4.8 67.2 1.0 N6 D:DA10 4.8 57.2 1.0 C5 D:DG11 4.8 62.8 1.0 C8 D:DG11 4.9 72.2 1.0 H8 D:DA10 4.9 80.8 1.0 H8 D:DG11 4.9 86.8 1.0 C6 D:DG11 5.0 75.9 1.0 P D:DA10 5.0 92.9 1.0

C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan. Structural and Computational Based Approach For the Creation of A Toolbox of Immobile Holliday Junctions For Dna-Directed Self-Assembly To Be Published.