Arsenic in PDB 7jon: Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J23 Immobile Holliday Junction

The structure of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J23 Immobile Holliday Junction, PDB code: 7jon was solved by C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.31 / 3.11
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	68.625, 68.625, 55.959, 90, 90, 120
R / Rfree (%)	22.7 / 24.4

The structure of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J23 Immobile Holliday Junction also contains other interesting chemical elements:

Magnesium

(Mg)

3 atoms

The binding sites of Arsenic atom in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J23 Immobile Holliday Junction (pdb code 7jon). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 2 binding sites of Arsenic where determined in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J23 Immobile Holliday Junction, PDB code: 7jon:
Jump to Arsenic binding site number: 1; 2;

Arsenic binding site 1 out of 2 in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J23 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J23 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ B:As101 b:248.0 occ:1.00 OP1 B:DA5 3.4 56.9 1.0 OP2 B:DA5 3.9 72.9 1.0 P B:DA5 4.2 55.5 1.0

Arsenic binding site 2 out of 2 in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J23 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J23 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ D:As101 b:194.7 occ:1.00 N7 D:DG11 3.9 48.1 1.0 N7 D:DG10 4.2 45.8 1.0 O6 D:DG11 4.4 61.9 1.0 OP2 D:DG10 4.6 45.5 1.0 C8 D:DG10 4.8 46.1 1.0 H8 D:DG10 4.8 55.4 1.0 C8 D:DG11 4.8 58.1 1.0 H8 D:DG11 4.8 69.9 1.0 C5 D:DG11 4.8 51.4 1.0 C5 D:DG10 5.0 47.1 1.0

C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan. Structural and Computational Based Approach For the Creation of A Toolbox of Immobile Holliday Junctions For Dna-Directed Self-Assembly To Be Published.