Arsenic in PDB 7jpb: Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J2 Immobile Holliday Junction

The structure of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J2 Immobile Holliday Junction, PDB code: 7jpb was solved by C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.56 / 3.16
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	69.111, 69.111, 56.404, 90, 90, 120
R / Rfree (%)	22.4 / 24.4

The binding sites of Arsenic atom in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J2 Immobile Holliday Junction (pdb code 7jpb). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 2 binding sites of Arsenic where determined in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J2 Immobile Holliday Junction, PDB code: 7jpb:
Jump to Arsenic binding site number: 1; 2;

Arsenic binding site 1 out of 2 in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J2 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J2 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ A:As101 b:177.3 occ:1.00 H4' A:DA15 3.9 151.5 1.0 H5' A:DA15 4.1 144.9 1.0 H21 A:DG14 4.2 141.9 1.0 H21 B:DG2 4.2 155.8 1.0 O4' A:DA15 4.3 121.9 1.0 C4' A:DA15 4.5 126.2 1.0 C5' A:DA15 4.7 120.7 1.0 H1' A:DG14 4.7 153.1 1.0 H5'' A:DA15 4.7 144.9 1.0 N3 A:DG14 4.8 120.9 1.0 N2 A:DG14 4.9 118.3 1.0 N2 B:DG2 5.0 129.8 1.0

Arsenic binding site 2 out of 2 in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J2 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J2 Immobile Holliday Junction within 5.0Å range:

C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan. Structural and Computational Based Approach For the Creation of A Toolbox of Immobile Holliday Junctions For Dna-Directed Self-Assembly To Be Published.