Arsenic in PDB 7lhk: High-Resolution Crystal Structure of A Lipin/Pah Phosphatidic Acid Phosphatase
Protein crystallography data
The structure of High-Resolution Crystal Structure of A Lipin/Pah Phosphatidic Acid Phosphatase, PDB code: 7lhk
was solved by
V.I.Khayyo,
M.V.Airola,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
55.25 /
1.95
|
Space group
|
C 2 2 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
144.41,
171.626,
62.845,
90,
90,
90
|
R / Rfree (%)
|
16.5 /
21.2
|
Arsenic Binding Sites:
The binding sites of Arsenic atom in the High-Resolution Crystal Structure of A Lipin/Pah Phosphatidic Acid Phosphatase
(pdb code 7lhk). This binding sites where shown within
5.0 Angstroms radius around Arsenic atom.
In total 2 binding sites of Arsenic where determined in the
High-Resolution Crystal Structure of A Lipin/Pah Phosphatidic Acid Phosphatase, PDB code: 7lhk:
Jump to Arsenic binding site number:
1;
2;
Arsenic binding site 1 out
of 2 in 7lhk
Go back to
Arsenic Binding Sites List in 7lhk
Arsenic binding site 1 out
of 2 in the High-Resolution Crystal Structure of A Lipin/Pah Phosphatidic Acid Phosphatase
Mono view
Stereo pair view
|
A full contact list of Arsenic with other atoms in the As binding
site number 1 of High-Resolution Crystal Structure of A Lipin/Pah Phosphatidic Acid Phosphatase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:As401
b:45.8
occ:1.00
|
AS
|
A:CAC401
|
0.0
|
45.8
|
1.0
|
O2
|
A:CAC401
|
1.6
|
89.4
|
1.0
|
C2
|
A:CAC401
|
2.0
|
28.7
|
1.0
|
C1
|
A:CAC401
|
2.0
|
34.8
|
1.0
|
SG
|
A:CYS276
|
2.3
|
22.6
|
1.0
|
H21
|
A:CAC401
|
2.5
|
34.5
|
1.0
|
H22
|
A:CAC401
|
2.5
|
34.5
|
1.0
|
H23
|
A:CAC401
|
2.5
|
34.5
|
1.0
|
H11
|
A:CAC401
|
2.5
|
41.7
|
1.0
|
H12
|
A:CAC401
|
2.5
|
41.7
|
1.0
|
H13
|
A:CAC401
|
2.5
|
41.7
|
1.0
|
HB2
|
A:CYS276
|
2.8
|
20.1
|
1.0
|
CB
|
A:CYS276
|
3.1
|
16.8
|
1.0
|
H
|
A:CYS276
|
3.3
|
29.7
|
1.0
|
HA
|
A:ALA273
|
3.5
|
54.0
|
1.0
|
HG23
|
A:ILE286
|
3.7
|
24.6
|
1.0
|
N
|
A:CYS276
|
3.8
|
24.8
|
1.0
|
HB3
|
A:CYS276
|
3.9
|
20.1
|
1.0
|
CA
|
A:CYS276
|
4.0
|
17.4
|
1.0
|
HB3
|
A:ALA275
|
4.1
|
27.7
|
1.0
|
HA
|
A:CYS276
|
4.2
|
20.9
|
1.0
|
HA3
|
A:GLY265
|
4.3
|
18.0
|
1.0
|
CA
|
A:ALA273
|
4.3
|
45.0
|
1.0
|
HD11
|
A:LEU248
|
4.4
|
26.5
|
1.0
|
HG12
|
A:ILE286
|
4.4
|
17.1
|
1.0
|
HG21
|
A:ILE286
|
4.5
|
24.6
|
1.0
|
HD3
|
A:LYS244
|
4.5
|
55.2
|
1.0
|
CG2
|
A:ILE286
|
4.5
|
20.5
|
1.0
|
HD13
|
A:ILE286
|
4.7
|
15.0
|
1.0
|
HD11
|
A:ILE288
|
4.7
|
26.5
|
1.0
|
N
|
A:ALA273
|
4.7
|
32.8
|
1.0
|
O
|
A:ALA273
|
4.8
|
28.4
|
1.0
|
HD12
|
A:LEU248
|
4.8
|
26.5
|
1.0
|
HA3
|
A:GLY267
|
4.8
|
25.5
|
1.0
|
C
|
A:ALA275
|
4.9
|
26.4
|
1.0
|
C
|
A:ALA273
|
4.9
|
32.6
|
1.0
|
CD1
|
A:LEU248
|
5.0
|
22.1
|
1.0
|
HD13
|
A:LEU248
|
5.0
|
26.5
|
1.0
|
|
Arsenic binding site 2 out
of 2 in 7lhk
Go back to
Arsenic Binding Sites List in 7lhk
Arsenic binding site 2 out
of 2 in the High-Resolution Crystal Structure of A Lipin/Pah Phosphatidic Acid Phosphatase
Mono view
Stereo pair view
|
A full contact list of Arsenic with other atoms in the As binding
site number 2 of High-Resolution Crystal Structure of A Lipin/Pah Phosphatidic Acid Phosphatase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:As401
b:41.5
occ:1.00
|
AS
|
B:CAC401
|
0.0
|
41.5
|
1.0
|
O2
|
B:CAC401
|
1.7
|
68.0
|
1.0
|
C1
|
B:CAC401
|
2.0
|
26.0
|
1.0
|
C2
|
B:CAC401
|
2.0
|
32.5
|
1.0
|
SG
|
B:CYS276
|
2.5
|
26.7
|
1.0
|
HB2
|
B:CYS276
|
2.9
|
21.3
|
1.0
|
CB
|
B:CYS276
|
3.3
|
17.8
|
1.0
|
H
|
B:CYS276
|
3.3
|
22.9
|
1.0
|
HG21
|
B:THR271
|
3.4
|
51.3
|
1.0
|
HG22
|
B:THR271
|
3.4
|
51.3
|
1.0
|
HG
|
B:CYS276
|
3.6
|
32.0
|
1.0
|
HA
|
B:ALA273
|
3.7
|
44.4
|
1.0
|
HB3
|
B:ALA275
|
3.8
|
27.9
|
1.0
|
N
|
B:CYS276
|
3.8
|
19.1
|
1.0
|
CG2
|
B:THR271
|
3.8
|
42.7
|
1.0
|
HB3
|
B:CYS276
|
4.0
|
21.3
|
1.0
|
CA
|
B:CYS276
|
4.1
|
24.4
|
1.0
|
HG23
|
B:ILE286
|
4.2
|
23.5
|
1.0
|
HA3
|
B:GLY265
|
4.2
|
15.4
|
1.0
|
HG23
|
B:THR271
|
4.2
|
51.3
|
1.0
|
O
|
B:ASP272
|
4.2
|
40.2
|
1.0
|
HA
|
B:CYS276
|
4.3
|
29.3
|
1.0
|
HD11
|
B:LEU248
|
4.4
|
27.7
|
1.0
|
CA
|
B:ALA273
|
4.6
|
37.0
|
1.0
|
CB
|
B:ALA275
|
4.7
|
23.2
|
1.0
|
C
|
B:ALA275
|
4.7
|
20.9
|
1.0
|
HD13
|
B:ILE286
|
4.7
|
21.5
|
1.0
|
O
|
B:ALA273
|
4.7
|
28.4
|
1.0
|
HD12
|
B:LEU248
|
4.8
|
27.7
|
1.0
|
HG21
|
B:ILE286
|
4.8
|
23.5
|
1.0
|
HD13
|
B:LEU248
|
4.9
|
27.7
|
1.0
|
CD1
|
B:LEU248
|
4.9
|
23.1
|
1.0
|
H
|
B:ALA275
|
4.9
|
23.3
|
1.0
|
C
|
B:ASP272
|
4.9
|
50.0
|
1.0
|
C
|
B:ALA273
|
4.9
|
33.9
|
1.0
|
CG2
|
B:ILE286
|
4.9
|
19.6
|
1.0
|
HB1
|
B:ALA275
|
5.0
|
27.9
|
1.0
|
HG12
|
B:ILE286
|
5.0
|
23.5
|
1.0
|
|
Reference:
V.I.Khayyo,
M.V.Airola.
High-Resolution Structure of Phosphatidic Acid Phosphohydrolase From Tetrahymena Thermophila To Be Published.
Page generated: Wed Jul 10 13:50:00 2024
|