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Arsenic in PDB 8bbj: Secretagogin (Mouse) in Complex with Its Target Peptide From Syntaxin- 4

Protein crystallography data

The structure of Secretagogin (Mouse) in Complex with Its Target Peptide From Syntaxin- 4, PDB code: 8bbj was solved by R.Schnell, E.Szodorai, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.29 / 2.65
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 79.409, 103.134, 121.656, 90, 90, 90
R / Rfree (%) 21.3 / 26.9

Other elements in 8bbj:

The structure of Secretagogin (Mouse) in Complex with Its Target Peptide From Syntaxin- 4 also contains other interesting chemical elements:

Calcium (Ca) 8 atoms

Arsenic Binding Sites:

The binding sites of Arsenic atom in the Secretagogin (Mouse) in Complex with Its Target Peptide From Syntaxin- 4 (pdb code 8bbj). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total only one binding site of Arsenic was determined in the Secretagogin (Mouse) in Complex with Its Target Peptide From Syntaxin- 4, PDB code: 8bbj:

Arsenic binding site 1 out of 1 in 8bbj

Go back to Arsenic Binding Sites List in 8bbj
Arsenic binding site 1 out of 1 in the Secretagogin (Mouse) in Complex with Its Target Peptide From Syntaxin- 4


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Secretagogin (Mouse) in Complex with Its Target Peptide From Syntaxin- 4 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:As305

b:95.3
occ:1.00
AS C:CAC305 0.0 95.3 1.0
O1 C:CAC305 1.7 85.7 1.0
O2 C:CAC305 1.7 85.5 1.0
C1 C:CAC305 1.9 77.7 1.0
C2 C:CAC305 1.9 86.3 1.0
NH1 C:ARG176 2.8 79.7 1.0
NE D:ARG176 3.8 71.4 1.0
CZ C:ARG176 4.1 72.4 1.0
NH2 D:ARG176 4.3 59.1 1.0
NZ D:LYS163 4.3 77.0 1.0
CD C:ARG176 4.3 66.1 1.0
NZ C:LYS163 4.5 75.7 1.0
CZ D:ARG176 4.5 65.7 1.0
NE C:ARG176 4.6 75.5 1.0
CD D:ARG176 4.7 68.0 1.0
CB D:ASN172 4.7 69.4 1.0
O C:ASN172 4.8 60.6 1.0
CB C:ASN172 4.8 72.8 1.0
CE D:LYS163 4.9 83.5 1.0

Reference:

R.Schnell, E.Szodorai. Calcium Binding Protein in Complex with Its 2ND Peptide Ligand To Be Published.
Page generated: Wed Jul 10 13:53:20 2024

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