Arsenic in PDB 2y0o: The Structure of A D-Lyxose Isomerase From the Sigmab Regulon of Bacillus Subtilis

Enzymatic activity of The Structure of A D-Lyxose Isomerase From the Sigmab Regulon of Bacillus Subtilis

All present enzymatic activity of The Structure of A D-Lyxose Isomerase From the Sigmab Regulon of Bacillus Subtilis:
5.3.1.15;

Protein crystallography data

The structure of The Structure of A D-Lyxose Isomerase From the Sigmab Regulon of Bacillus Subtilis, PDB code: 2y0o was solved by J.Marles-Wright, R.J.Lewis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	34.872 / 1.23
*Space group*	C 1 2 1
*Cell size a, b, c (Å), α, β, γ (°)*	74.716, 42.619, 65.881, 90.00, 121.30, 90.00
*R / R_free (%)*	14.53 / 17.82

Other elements in 2y0o:

The structure of The Structure of A D-Lyxose Isomerase From the Sigmab Regulon of Bacillus Subtilis also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

Arsenic Binding Sites:

The binding sites of Arsenic atom in the The Structure of A D-Lyxose Isomerase From the Sigmab Regulon of Bacillus Subtilis (pdb code 2y0o). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total only one binding site of Arsenic was determined in the The Structure of A D-Lyxose Isomerase From the Sigmab Regulon of Bacillus Subtilis, PDB code: 2y0o:

Arsenic binding site 1 out of 1 in 2y0o

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Arsenic Binding Sites List in 2y0o

Arsenic binding site 1 out of 1 in the The Structure of A D-Lyxose Isomerase From the Sigmab Regulon of Bacillus Subtilis

Mono view

Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of The Structure of A D-Lyxose Isomerase From the Sigmab Regulon of Bacillus Subtilis within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:As1176 b:33.2 occ:0.62	O	A:HOH2263	2.0	33.1	1.0
	O	A:HOH2234	2.2	25.0	1.0
	O	A:HOH2262	3.3	24.7	1.0
	ZN	A:ZN1173	3.6	12.3	0.6
	OE1	A:GLU150	3.6	23.6	1.0
	NZ	A:LYS80	4.0	21.4	1.0
	OE1	A:GLU82	4.0	26.8	1.0
	NE2	A:HIS69	4.1	16.4	1.0
	CE1	A:HIS71	4.2	12.8	1.0
	NE2	A:HIS71	4.4	13.4	1.0
	O	A:HOH2248	4.5	17.9	1.0
	OE2	A:GLU82	4.5	20.5	1.0
	CD	A:GLU150	4.5	23.0	1.0
	CD2	A:LEU42	4.6	15.7	1.0
	CE1	A:HIS69	4.7	16.2	1.0
	NZ	A:LYS56	4.7	19.4	1.0
	CD	A:GLU82	4.8	22.7	1.0
	OE2	A:GLU150	4.8	25.0	1.0

Reference:

J.Marles-Wright, R.J.Lewis. The Structure of A D-Lyxose Isomerase From the Sigmab Regulon of Bacillus Subtilis Proteins V. 79 2015 2011.
ISSN: ISSN 0887-3585
PubMed: 21520290
DOI: 10.1002/PROT.23028

Page generated: Sun Jul 6 23:18:04 2025

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