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Arsenic in PDB 6j6x: Crystal Structure of Apo Ggtaseiii

Enzymatic activity of Crystal Structure of Apo Ggtaseiii

All present enzymatic activity of Crystal Structure of Apo Ggtaseiii:
2.5.1.60;

Protein crystallography data

The structure of Crystal Structure of Apo Ggtaseiii, PDB code: 6j6x was solved by S.Goto-Ito, A.Yamagata, Y.Sato, S.Fukai, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.48 / 2.96
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 88.540, 88.540, 647.581, 90.00, 90.00, 120.00
R / Rfree (%) 26.6 / 29.8

Other elements in 6j6x:

The structure of Crystal Structure of Apo Ggtaseiii also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Arsenic Binding Sites:

The binding sites of Arsenic atom in the Crystal Structure of Apo Ggtaseiii (pdb code 6j6x). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 2 binding sites of Arsenic where determined in the Crystal Structure of Apo Ggtaseiii, PDB code: 6j6x:
Jump to Arsenic binding site number: 1; 2;

Arsenic binding site 1 out of 2 in 6j6x

Go back to Arsenic Binding Sites List in 6j6x
Arsenic binding site 1 out of 2 in the Crystal Structure of Apo Ggtaseiii


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Crystal Structure of Apo Ggtaseiii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As60

b:0.1
occ:1.00
AS A:CAS60 0.0 0.1 1.0
CE2 A:CAS60 1.9 0.5 1.0
CE1 A:CAS60 1.9 0.2 1.0
SG A:CAS60 2.3 0.8 1.0
CB A:CAS60 3.3 0.8 1.0
C A:CAS60 3.6 0.9 1.0
CG2 A:VAL56 3.7 0.2 1.0
N A:VAL61 3.7 0.3 1.0
O A:CAS60 3.8 0.7 1.0
CG2 A:VAL61 4.0 0.0 1.0
CA A:VAL61 4.0 0.6 1.0
CA A:CAS60 4.1 0.3 1.0
CD1 A:LEU97 4.4 86.1 1.0
CB A:VAL61 4.5 0.4 1.0
CB A:LEU64 4.7 0.4 1.0
CB A:VAL56 4.9 98.0 1.0
CG1 A:VAL61 5.0 0.4 1.0

Arsenic binding site 2 out of 2 in 6j6x

Go back to Arsenic Binding Sites List in 6j6x
Arsenic binding site 2 out of 2 in the Crystal Structure of Apo Ggtaseiii


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Crystal Structure of Apo Ggtaseiii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As92

b:0.3
occ:1.00
AS A:CAS92 0.0 0.3 1.0
CE1 A:CAS92 1.9 0.1 1.0
CE2 A:CAS92 1.9 0.6 1.0
SG A:CAS92 2.3 0.2 1.0
CB A:CAS92 3.3 86.6 1.0
OD1 A:ASP89 4.5 95.6 1.0
OG1 A:THR20 4.5 0.6 1.0
CA A:CAS92 4.6 76.9 1.0
O A:ILE88 4.7 87.5 1.0
C A:CAS92 4.8 82.0 1.0
O A:ASP89 4.9 83.9 1.0
CD1 A:LEU96 5.0 79.2 1.0

Reference:

S.Goto-Ito, R.Shirakawa, S.Fukai. Crystal Structure of Apo Ggtaseiii To Be Published.
Page generated: Mon Jul 7 00:44:26 2025

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