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Arsenic in PDB 6wsn: Self-Assembly of A 3D Dna Crystal Lattice (4X5 Duplex Version) Containing the J7 Immobile Holliday Junction

Protein crystallography data

The structure of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Duplex Version) Containing the J7 Immobile Holliday Junction, PDB code: 6wsn was solved by C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.12 / 3.05
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 68.245, 68.245, 61.163, 90, 90, 120
R / Rfree (%) 25.7 / 28.7

Arsenic Binding Sites:

The binding sites of Arsenic atom in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Duplex Version) Containing the J7 Immobile Holliday Junction (pdb code 6wsn). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 2 binding sites of Arsenic where determined in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Duplex Version) Containing the J7 Immobile Holliday Junction, PDB code: 6wsn:
Jump to Arsenic binding site number: 1; 2;

Arsenic binding site 1 out of 2 in 6wsn

Go back to Arsenic Binding Sites List in 6wsn
Arsenic binding site 1 out of 2 in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Duplex Version) Containing the J7 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Duplex Version) Containing the J7 Immobile Holliday Junction within 5.0Å range:
probe atom residue distance (Å) B Occ
B:As101

b:232.5
occ:1.00
N7 B:DG2 4.3 107.1 1.0
O6 B:DG2 4.5 108.1 1.0
O4 B:DT3 4.8 106.4 1.0
OP2 B:DC1 4.9 104.3 1.0

Arsenic binding site 2 out of 2 in 6wsn

Go back to Arsenic Binding Sites List in 6wsn
Arsenic binding site 2 out of 2 in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Duplex Version) Containing the J7 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Duplex Version) Containing the J7 Immobile Holliday Junction within 5.0Å range:
probe atom residue distance (Å) B Occ
D:As101

b:134.8
occ:1.00
O6 D:DG11 4.1 102.1 1.0
OP2 D:DG10 4.2 124.0 1.0
N7 D:DG11 4.3 93.2 1.0
N7 D:DG10 4.7 100.7 1.0
P D:DG10 4.9 126.5 1.0
C6 D:DG11 4.9 94.8 1.0

Reference:

C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan. Structural and Computational Based Approach For the Creation of A Toolbox of Immobile Holliday Junctions For Dna-Directed Self-Assembly To Be Published.
Page generated: Mon Jul 7 00:48:56 2025

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