Arsenic in PDB 6xdv: Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J3 Immobile Holliday Junction

The structure of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J3 Immobile Holliday Junction, PDB code: 6xdv was solved by C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.47 / 3.00
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	68.932, 68.932, 60.748, 90, 90, 120
R / Rfree (%)	22.7 / 25.2

The binding sites of Arsenic atom in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J3 Immobile Holliday Junction (pdb code 6xdv). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 3 binding sites of Arsenic where determined in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J3 Immobile Holliday Junction, PDB code: 6xdv:
Jump to Arsenic binding site number: 1; 2; 3;

Arsenic binding site 1 out of 3 in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J3 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J3 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ C:As101 b:113.7 occ:1.00 OP2 C:DA3 4.0 99.4 1.0 N7 C:DG4 4.1 74.3 1.0 O6 C:DG4 4.2 76.3 1.0 C5 C:DG4 4.9 73.2 1.0 C6 C:DG4 4.9 80.3 1.0 N7 C:DA3 5.0 78.6 1.0

Arsenic binding site 2 out of 3 in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J3 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J3 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ D:As101 b:144.5 occ:1.00 O6 D:DG11 4.3 95.0 1.0 N7 D:DG11 4.8 90.5 1.0

Arsenic binding site 3 out of 3 in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J3 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 3 of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J3 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ D:As102 b:179.1 occ:1.00 N7 D:DG8 3.8 97.9 1.0 OP2 D:DG8 4.0 127.1 1.0 C8 D:DG8 4.2 101.8 1.0 C2' D:DT7 4.8 115.0 1.0 O6 D:DG9 4.8 90.5 1.0 N7 D:DG9 4.9 78.6 1.0

C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan. Structural and Computational Based Approach For the Creation of A Toolbox of Immobile Holliday Junctions For Dna-Directed Self-Assembly To Be Published.