Atomistry » Arsenic » PDB 6wri-6xl2 » 6xfd
Atomistry »
  Arsenic »
    PDB 6wri-6xl2 »
      6xfd »

Arsenic in PDB 6xfd: Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J20 Immobile Holliday Junction

Protein crystallography data

The structure of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J20 Immobile Holliday Junction, PDB code: 6xfd was solved by C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.78 / 3.10
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 67.551, 67.551, 60.397, 90, 90, 120
R / Rfree (%) 22.3 / 28.6

Arsenic Binding Sites:

The binding sites of Arsenic atom in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J20 Immobile Holliday Junction (pdb code 6xfd). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 2 binding sites of Arsenic where determined in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J20 Immobile Holliday Junction, PDB code: 6xfd:
Jump to Arsenic binding site number: 1; 2;

Arsenic binding site 1 out of 2 in 6xfd

Go back to Arsenic Binding Sites List in 6xfd
Arsenic binding site 1 out of 2 in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J20 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J20 Immobile Holliday Junction within 5.0Å range:
probe atom residue distance (Å) B Occ
C:As101

b:205.7
occ:1.00
O6 C:DG4 3.6 128.6 1.0
N7 C:DG4 4.2 114.2 1.0
N6 B:DA12 4.3 126.6 1.0
O4 C:DT5 4.4 124.4 1.0
C6 C:DG4 4.5 121.6 1.0
C7 C:DT3 4.6 106.9 1.0
C5 C:DG4 4.8 112.2 1.0
O4 C:DT3 4.9 114.8 1.0

Arsenic binding site 2 out of 2 in 6xfd

Go back to Arsenic Binding Sites List in 6xfd
Arsenic binding site 2 out of 2 in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J20 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J20 Immobile Holliday Junction within 5.0Å range:
probe atom residue distance (Å) B Occ
C:As102

b:203.9
occ:1.00
N6 C:DA2 3.9 119.1 1.0
OP2 D:DC9 4.3 112.5 1.0
N7 C:DA2 4.3 116.0 1.0
C5 C:DC1 4.4 132.6 1.0
OP1 D:DC9 4.7 97.9 1.0
N4 D:DC10 4.8 107.7 1.0
C6 C:DC1 4.8 127.2 1.0
C6 C:DA2 4.9 115.9 1.0
C5 C:DA2 4.9 112.9 1.0
P D:DC9 5.0 117.6 1.0

Reference:

C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan. Structural and Computational Based Approach For the Creation of A Toolbox of Immobile Holliday Junctions For Dna-Directed Self-Assembly To Be Published.
Page generated: Mon Jul 7 00:51:00 2025

Last articles

K in 6QD4
K in 6QM2
K in 6QD3
K in 6QD2
K in 6QD1
K in 6Q6R
K in 6QD0
K in 6QCZ
K in 6QCY
K in 6Q8P
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy