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Arsenic in PDB 6xfg: Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J23 Immobile Holliday Junction

Protein crystallography data

The structure of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J23 Immobile Holliday Junction, PDB code: 6xfg was solved by C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.25 / 3.05
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 68.458, 68.458, 60.214, 90, 90, 120
R / Rfree (%) 21.5 / 24.1

Arsenic Binding Sites:

The binding sites of Arsenic atom in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J23 Immobile Holliday Junction (pdb code 6xfg). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 2 binding sites of Arsenic where determined in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J23 Immobile Holliday Junction, PDB code: 6xfg:
Jump to Arsenic binding site number: 1; 2;

Arsenic binding site 1 out of 2 in 6xfg

Go back to Arsenic Binding Sites List in 6xfg
Arsenic binding site 1 out of 2 in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J23 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J23 Immobile Holliday Junction within 5.0Å range:
probe atom residue distance (Å) B Occ
C:As101

b:190.1
occ:1.00
OP2 C:DA2 4.3 84.5 1.0
N7 D:DG9 4.5 58.4 1.0
O4 C:DT3 4.5 63.9 1.0
OP1 C:DA2 4.7 86.8 1.0
C7 C:DT3 4.9 68.1 1.0
O6 D:DG9 4.9 60.8 1.0

Arsenic binding site 2 out of 2 in 6xfg

Go back to Arsenic Binding Sites List in 6xfg
Arsenic binding site 2 out of 2 in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J23 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J23 Immobile Holliday Junction within 5.0Å range:
probe atom residue distance (Å) B Occ
D:As101

b:155.8
occ:1.00
N7 D:DG11 3.9 62.3 1.0
O6 D:DG11 4.2 85.9 1.0
OP2 D:DG10 4.2 81.0 1.0
N7 D:DG10 4.3 66.7 1.0
OP1 D:DG9 4.7 82.2 1.0
C5 D:DG11 4.8 69.5 1.0
C6 D:DG11 4.9 80.0 1.0
C5 D:DG10 4.9 62.9 1.0
C8 D:DG10 4.9 66.5 1.0
O6 D:DG10 4.9 82.0 1.0
C8 D:DG11 5.0 69.5 1.0

Reference:

C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan. Structural and Computational Based Approach For the Creation of A Toolbox of Immobile Holliday Junctions For Dna-Directed Self-Assembly To Be Published.
Page generated: Mon Jul 7 00:51:23 2025

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