Arsenic in PDB 6xfz: Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J29 Immobile Holliday Junction

The structure of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J29 Immobile Holliday Junction, PDB code: 6xfz was solved by C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	26.47 / 3.11
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	68.652, 68.652, 58.14, 90, 90, 120
R / Rfree (%)	24.4 / 26.2

The binding sites of Arsenic atom in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J29 Immobile Holliday Junction (pdb code 6xfz). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 2 binding sites of Arsenic where determined in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J29 Immobile Holliday Junction, PDB code: 6xfz:
Jump to Arsenic binding site number: 1; 2;

Arsenic binding site 1 out of 2 in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J29 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J29 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ C:As101 b:164.4 occ:1.00 OP2 C:DA3 2.8 77.7 1.0 P C:DA3 4.2 96.8 1.0 N7 C:DG4 4.4 58.0 1.0 N7 C:DA3 4.5 66.9 1.0 O6 C:DG4 4.6 64.6 1.0 OP1 C:DT2 4.7 87.3 1.0 C5' C:DT2 4.7 71.4 1.0 C8 C:DA3 4.9 66.1 1.0 OP1 C:DA3 4.9 94.7 1.0 O5' C:DA3 4.9 69.1 1.0

Arsenic binding site 2 out of 2 in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J29 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J29 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ D:As101 b:140.2 occ:1.00 O6 D:DG11 3.7 70.6 1.0 C7 D:DT10 3.8 61.4 1.0 N7 D:DG11 3.9 54.4 1.0 O4 D:DT10 4.3 48.2 1.0 OP1 D:DC9 4.4 85.2 1.0 C6 D:DG11 4.5 68.8 1.0 C5 D:DT10 4.5 62.5 1.0 C5 D:DG11 4.6 62.5 1.0 C4 D:DT10 4.7 56.0 1.0 O4 D:DT12 5.0 77.6 1.0

C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan. Structural and Computational Based Approach For the Creation of A Toolbox of Immobile Holliday Junctions For Dna-Directed Self-Assembly To Be Published.