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Arsenic in PDB 6xup: Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'- Patcgtggccacgat

Protein crystallography data

The structure of Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'- Patcgtggccacgat, PDB code: 6xup was solved by S.Grazulis, M.Zaremba, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.72 / 1.90
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 51.798, 60.872, 101.718, 76.56, 75.59, 79.39
R / Rfree (%) 18.1 / 22.4

Other elements in 6xup:

The structure of Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'- Patcgtggccacgat also contains other interesting chemical elements:

Potassium (K) 1 atom
Magnesium (Mg) 3 atoms
Chlorine (Cl) 1 atom

Arsenic Binding Sites:

The binding sites of Arsenic atom in the Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'- Patcgtggccacgat (pdb code 6xup). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 2 binding sites of Arsenic where determined in the Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'- Patcgtggccacgat, PDB code: 6xup:
Jump to Arsenic binding site number: 1; 2;

Arsenic binding site 1 out of 2 in 6xup

Go back to Arsenic Binding Sites List in 6xup
Arsenic binding site 1 out of 2 in the Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'- Patcgtggccacgat


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'- Patcgtggccacgat within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As515

b:159.5
occ:1.00
AS A:CAC515 0.0 159.5 1.0
O1 A:CAC515 1.7 82.9 1.0
O2 A:CAC515 1.7 92.3 1.0
C2 A:CAC515 2.0 62.1 1.0
C1 A:CAC515 2.0 100.5 1.0
O A:HOH601 3.8 55.2 1.0
O A:GLY408 4.5 47.2 1.0
CE2 A:TYR410 4.6 49.5 1.0
CZ A:TYR410 4.7 48.6 1.0
CD2 A:TYR410 4.8 45.9 1.0
O A:GLY409 4.9 54.7 1.0

Arsenic binding site 2 out of 2 in 6xup

Go back to Arsenic Binding Sites List in 6xup
Arsenic binding site 2 out of 2 in the Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'- Patcgtggccacgat


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'- Patcgtggccacgat within 5.0Å range:
probe atom residue distance (Å) B Occ
B:As505

b:174.0
occ:1.00
AS B:CAC505 0.0 174.0 1.0
O1 B:CAC505 1.7 93.4 1.0
O2 B:CAC505 1.7 106.7 1.0
C2 B:CAC505 2.0 63.9 1.0
C1 B:CAC505 2.0 51.8 1.0
O B:HOH628 3.6 77.4 1.0
O B:GLY408 3.9 69.4 1.0
O B:GLY409 4.0 48.2 1.0
C B:GLY409 4.2 48.0 1.0
CA B:GLY409 4.7 47.1 1.0
CE1 B:TYR410 4.7 43.4 1.0
N B:TYR410 4.7 39.4 1.0
C B:GLY408 4.7 61.4 1.0
CD1 B:TYR410 4.7 36.1 1.0
CZ B:TYR410 4.8 40.8 1.0
CG B:TYR410 4.9 41.0 1.0
CE2 B:TYR410 5.0 38.1 1.0

Reference:

E.Golovinas, E.Manakova, G.Sasnauskas, M.Zaremba. Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'-Patcgtggccacgat To Be Published.
Page generated: Mon Jul 7 00:53:04 2025

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