Arsenic in PDB 7jha: Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J23 Immobile Holliday Junction

The structure of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J23 Immobile Holliday Junction, PDB code: 7jha was solved by C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.31 / 3.11
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	68.625, 68.625, 55.959, 90, 90, 120
R / Rfree (%)	21.5 / 22.6

The binding sites of Arsenic atom in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J23 Immobile Holliday Junction (pdb code 7jha). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 2 binding sites of Arsenic where determined in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J23 Immobile Holliday Junction, PDB code: 7jha:
Jump to Arsenic binding site number: 1; 2;

Arsenic binding site 1 out of 2 in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J23 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J23 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ C:As101 b:160.3 occ:1.00 H73 C:DT3 3.4 57.8 1.0 OP2 C:DA2 3.8 56.8 1.0 H71 C:DT3 3.9 57.8 1.0 C7 C:DT3 4.1 47.9 1.0 OP1 C:DA2 4.4 72.6 1.0 H72 D:DT8 4.5 45.5 1.0 N7 D:DG9 4.6 57.3 1.0 P C:DA2 4.6 43.5 1.0 O6 D:DG9 4.6 55.3 1.0 H72 C:DT3 4.6 57.8 1.0 O4 C:DT3 4.7 43.5 1.0

Arsenic binding site 2 out of 2 in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J23 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J23 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ D:As101 b:130.8 occ:1.00 N7 D:DG11 3.7 44.6 1.0 N7 D:DG10 4.0 47.8 1.0 H8 D:DG11 4.3 64.7 1.0 C8 D:DG11 4.4 53.7 1.0 OP2 D:DG10 4.5 81.7 1.0 C5 D:DG10 4.6 47.3 1.0 O6 D:DG10 4.6 49.6 1.0 C8 D:DG10 4.6 41.6 1.0 H5' D:DG9 4.7 65.5 1.0 H8 D:DG10 4.8 50.1 1.0 O6 D:DG11 4.8 57.2 1.0 C5 D:DG11 4.8 54.8 1.0 C6 D:DG10 4.9 46.6 1.0 OP1 D:DG9 4.9 38.5 1.0

C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan. Structural and Computational Based Approach For the Creation of A Toolbox of Immobile Holliday Junctions For Dna-Directed Self-Assembly To Be Published.