Arsenic in PDB 7jol: Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J24 Immobile Holliday Junction

The structure of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J24 Immobile Holliday Junction, PDB code: 7jol was solved by C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.05 / 3.11
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	68.104, 68.104, 57.304, 90, 90, 120
R / Rfree (%)	24.8 / 25.7

The binding sites of Arsenic atom in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J24 Immobile Holliday Junction (pdb code 7jol). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 3 binding sites of Arsenic where determined in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J24 Immobile Holliday Junction, PDB code: 7jol:
Jump to Arsenic binding site number: 1; 2; 3;

Arsenic binding site 1 out of 3 in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J24 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J24 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ A:As101 b:123.4 occ:1.00 H41 A:DC13 3.7 97.3 1.0 N4 A:DC13 4.5 81.6 1.0 H42 A:DC13 4.8 97.3 1.0 H5 A:DC13 4.9 84.1 1.0 H41 B:DC1 4.9 88.4 1.0

Arsenic binding site 2 out of 3 in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J24 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J24 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ A:As102 b:347.8 occ:1.00 H41 A:DC8 2.8 144.3 1.0 N4 A:DC8 3.6 120.8 1.0 H5 A:DC8 3.7 139.9 1.0 H42 A:DC8 4.0 144.3 1.0 C5 A:DC8 4.4 117.2 1.0 C4 A:DC8 4.4 111.7 1.0 N7 A:DA7 4.8 141.1 1.0 H41 A:DC9 4.9 111.3 1.0

Arsenic binding site 3 out of 3 in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J24 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 3 of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Duplex Version) Containing the J24 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ A:As103 b:360.4 occ:1.00 H41 A:DC18 2.9 98.2 1.0 N4 A:DC18 3.7 82.3 1.0 H42 A:DC18 4.1 98.2 1.0 H5 A:DC18 4.2 93.4 1.0 H62 C:DA5 4.7 82.1 1.0 C4 A:DC18 4.7 78.7 1.0 C5 A:DC18 4.8 78.4 1.0

C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan. Structural and Computational Based Approach For the Creation of A Toolbox of Immobile Holliday Junctions For Dna-Directed Self-Assembly To Be Published.