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Arsenic in PDB 7lhk: High-Resolution Crystal Structure of A Lipin/Pah Phosphatidic Acid Phosphatase

Protein crystallography data

The structure of High-Resolution Crystal Structure of A Lipin/Pah Phosphatidic Acid Phosphatase, PDB code: 7lhk was solved by V.I.Khayyo, M.V.Airola, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.25 / 1.95
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 144.41, 171.626, 62.845, 90, 90, 90
R / Rfree (%) 16.5 / 21.2

Arsenic Binding Sites:

The binding sites of Arsenic atom in the High-Resolution Crystal Structure of A Lipin/Pah Phosphatidic Acid Phosphatase (pdb code 7lhk). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 2 binding sites of Arsenic where determined in the High-Resolution Crystal Structure of A Lipin/Pah Phosphatidic Acid Phosphatase, PDB code: 7lhk:
Jump to Arsenic binding site number: 1; 2;

Arsenic binding site 1 out of 2 in 7lhk

Go back to Arsenic Binding Sites List in 7lhk
Arsenic binding site 1 out of 2 in the High-Resolution Crystal Structure of A Lipin/Pah Phosphatidic Acid Phosphatase


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of High-Resolution Crystal Structure of A Lipin/Pah Phosphatidic Acid Phosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As401

b:45.8
occ:1.00
AS A:CAC401 0.0 45.8 1.0
O2 A:CAC401 1.6 89.4 1.0
C2 A:CAC401 2.0 28.7 1.0
C1 A:CAC401 2.0 34.8 1.0
SG A:CYS276 2.3 22.6 1.0
H21 A:CAC401 2.5 34.5 1.0
H22 A:CAC401 2.5 34.5 1.0
H23 A:CAC401 2.5 34.5 1.0
H11 A:CAC401 2.5 41.7 1.0
H12 A:CAC401 2.5 41.7 1.0
H13 A:CAC401 2.5 41.7 1.0
HB2 A:CYS276 2.8 20.1 1.0
CB A:CYS276 3.1 16.8 1.0
H A:CYS276 3.3 29.7 1.0
HA A:ALA273 3.5 54.0 1.0
HG23 A:ILE286 3.7 24.6 1.0
N A:CYS276 3.8 24.8 1.0
HB3 A:CYS276 3.9 20.1 1.0
CA A:CYS276 4.0 17.4 1.0
HB3 A:ALA275 4.1 27.7 1.0
HA A:CYS276 4.2 20.9 1.0
HA3 A:GLY265 4.3 18.0 1.0
CA A:ALA273 4.3 45.0 1.0
HD11 A:LEU248 4.4 26.5 1.0
HG12 A:ILE286 4.4 17.1 1.0
HG21 A:ILE286 4.5 24.6 1.0
HD3 A:LYS244 4.5 55.2 1.0
CG2 A:ILE286 4.5 20.5 1.0
HD13 A:ILE286 4.7 15.0 1.0
HD11 A:ILE288 4.7 26.5 1.0
N A:ALA273 4.7 32.8 1.0
O A:ALA273 4.8 28.4 1.0
HD12 A:LEU248 4.8 26.5 1.0
HA3 A:GLY267 4.8 25.5 1.0
C A:ALA275 4.9 26.4 1.0
C A:ALA273 4.9 32.6 1.0
CD1 A:LEU248 5.0 22.1 1.0
HD13 A:LEU248 5.0 26.5 1.0

Arsenic binding site 2 out of 2 in 7lhk

Go back to Arsenic Binding Sites List in 7lhk
Arsenic binding site 2 out of 2 in the High-Resolution Crystal Structure of A Lipin/Pah Phosphatidic Acid Phosphatase


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of High-Resolution Crystal Structure of A Lipin/Pah Phosphatidic Acid Phosphatase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:As401

b:41.5
occ:1.00
AS B:CAC401 0.0 41.5 1.0
O2 B:CAC401 1.7 68.0 1.0
C1 B:CAC401 2.0 26.0 1.0
C2 B:CAC401 2.0 32.5 1.0
SG B:CYS276 2.5 26.7 1.0
HB2 B:CYS276 2.9 21.3 1.0
CB B:CYS276 3.3 17.8 1.0
H B:CYS276 3.3 22.9 1.0
HG21 B:THR271 3.4 51.3 1.0
HG22 B:THR271 3.4 51.3 1.0
HG B:CYS276 3.6 32.0 1.0
HA B:ALA273 3.7 44.4 1.0
HB3 B:ALA275 3.8 27.9 1.0
N B:CYS276 3.8 19.1 1.0
CG2 B:THR271 3.8 42.7 1.0
HB3 B:CYS276 4.0 21.3 1.0
CA B:CYS276 4.1 24.4 1.0
HG23 B:ILE286 4.2 23.5 1.0
HA3 B:GLY265 4.2 15.4 1.0
HG23 B:THR271 4.2 51.3 1.0
O B:ASP272 4.2 40.2 1.0
HA B:CYS276 4.3 29.3 1.0
HD11 B:LEU248 4.4 27.7 1.0
CA B:ALA273 4.6 37.0 1.0
CB B:ALA275 4.7 23.2 1.0
C B:ALA275 4.7 20.9 1.0
HD13 B:ILE286 4.7 21.5 1.0
O B:ALA273 4.7 28.4 1.0
HD12 B:LEU248 4.8 27.7 1.0
HG21 B:ILE286 4.8 23.5 1.0
HD13 B:LEU248 4.9 27.7 1.0
CD1 B:LEU248 4.9 23.1 1.0
H B:ALA275 4.9 23.3 1.0
C B:ASP272 4.9 50.0 1.0
C B:ALA273 4.9 33.9 1.0
CG2 B:ILE286 4.9 19.6 1.0
HB1 B:ALA275 5.0 27.9 1.0
HG12 B:ILE286 5.0 23.5 1.0

Reference:

V.I.Khayyo, M.V.Airola. High-Resolution Structure of Phosphatidic Acid Phosphohydrolase From Tetrahymena Thermophila To Be Published.
Page generated: Mon Jul 7 01:01:49 2025

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